Intuit QuickBooks Merchant Services Center – How to Sign in from QuickBooks Online and Process payments

Intuit QuickBooks Payment Network, typically intended to meet the accounting needs of small to medium-sized businesses. Intuit Merchant Services/QuickBooks Payment covers all kinds of merchant processing. Additionally, by using merchant services, you can reduce credit and debit card payment prices by up to 1.50%.

In addition, with Intuit Merchant Services, you will also get invoices, e-commerce support, and ACH payments at a reasonable price. It is excellent that Intuit is working towards implementing effective payment explications. But there is a problem, it has come with a lot of options in the market.

Intuit QuickBooks Merchant Services Center

Some Pros and Cons of Intuit QuickBooks Merchant Services Center


  • Expected flat-rate pricing
  • Seamless QuickBooks integration
  • Cheap chip card readers
  • No monthly points
  • Good for professional assistance


  • Short invoice customization
  • High per-transaction charges
  • Slow deposit rates
  • Irregular customer support

What other services you will get with the Intuit QuickBooks Merchant Services center?

Easy Integration with QuickBooks

The QuickBooks Merchant Services account covers all the processing elements in QuickBooks. This applies to all QuickBooks products. This service also allows accepting credit cards, debit cards, and bank transfer (ACH) online. Direct payment integration auto-updates all invoices and books on one sale.

All this is at a rate of 1.5% for Enterprise and 1.75% for Pro, Premier, and Online editions.


You can set payment preferences here. The method of payment that you will accept from customers. Now, customers can check online and cross-check when they are updated. This assures that the correct dues/dues are displayed.

As a merchant, you are notified as soon as you receive payment. The invoice is marked as cleared or paid


It allows processing customer checks with QuickBooks Desktop. It automatically updates invoices and deposit payments in between 2-3 days. It saves your time to reach you to your bank again and again.

EMV Ready

QuickBooks merchant account EMV is ready. To avoid liability for the costs associated with credit card fraud, all you need to do is use it with an EMV reader.

Compatible with Mobile Payments and e-Commerce Payments

The GoPayment interface makes mobile payment processing easier. You can maximize sales by reading credit cards on mobile. It connects easily to shopping carts like WooCommerce, Shopify, etc. In addition, it comes with 128-bit SSL encryption.

Products and Services Offered by Intuit Merchant Services

While signing in for QuickBooks payments, Intuit provides you your merchant account with a monthly transaction limit. And every account develops with QuickBooks integration. But the plans and features depend on the version of QuickBooks which you are using.

QuickBooks Online Payments

It is a payment resolution aimed towards the users of QuickBooks Online. You can integrate QuickBooks Online Payments with QB Online.

It allows you to set up recurring payments, send invoices, and accept swiped transactions with sales receipt on the go using this plan.

It enables to auto-populate the invoice and sales receipts from the customer list and product/service directory.

QuickBooks Online offers a mobile app for Android and iOS which allows you to connect GoPayment Readers to receive payments.

Processing rates in this version are relatively inexpensive and, in particular, ACH transfers are free.

Here’s the analysis of rates and fees:

  • Monthly fee: $0.00
  • ACH Transfer: $0.00
  • Swiped Credit/Debit: 2.4% + $0.25 per transaction
  • Invoices, PayPal, Apple Pay: 2.9% + $0.25 per transaction
  • Keyed: 3.4% + $0.25 per transaction

QuickBooks Desktop Payments

Mobile payments are difficult to accept with QuickBooks desktop payment. The main reason is the inadequacy of GoPayments to sync with the desktop version.

It allows you to set up recurring payments, send invoices, and accept swiped transactions with sales receipt on the go using this plan.

It enables you to auto-populate the invoice and sales receipts from the customer list and product/service directory.

Here, ACH transfers are not free. You charged with $1 per transaction.

Here’s the analysis of rates and fees:

  • Pay As You Go Plan
  • Monthly fee: $0.00
  • ACH Transfer: $1.00 per transaction
  • Swiped Credit/Debit: 2.4% + $0.30/transaction
  • Invoices/Apple Pay: 3.5% + $0.30/transaction
  • Keyed: 3.5% + $0.30/transaction
  • Pay Monthly Plan
  • Monthly fee: $20.00
  • ACH Transfer: $1.00
  • Swiped Credit/Debit: 1.6% + $0.30 per transaction.
  • Invoices/Apple Pay: 3.3% + $0.30 per transaction.
  • Keyed: 3.3% + $0.30 per transaction.

QuickBooks Point of Sale

It is a payment resolution targeted towards brick and mortar retail outlets.

It directs towards complete automation. You do not require to enter any data, it will automatically populate invoices for you.

It is a desktop-based system and cooperative with QuickBooks Desktop and also does not get ACH transfers with QuickBooks Point of Sale.

Buying hardware from third-party vendors for QuickBooks Point of Sale.

It allows you to receive payments, ring sales, track inventory, track and reward customers, and sync with QuickBooks.

Here’s the analysis of rates and fees:

  • Basic Plan
  • Monthly Fee: $0.00
  • Swiped Credit/Debit: 2.7% + $0.00 per transaction
  • PIN Debit: 1.0% + $0.00 per transaction
  • Keyed: 3.4% + $0.00 per transaction
  • Pro plan
  • Monthly Fee: $19.95
  • Swiped Credit/Debit: 2.3% + $0.25 per transaction
  • PIN Debit: 1.0% + $0.25 per transaction
  • Keyed: 3.2% + $0.25 per transaction

QuickBooks eCommerce

QuickBooks eCommerce as the name suggests it is a payment processing method for online businesses. This offers a payment gateway and an API with a hosted page.

It is cooperative with major Shopping cart providers such as Big-commerce and Shopify.

When you are using QuickBooks Pay for other aspects of business, it is better to use QuickBooks eCommerce. Otherwise, you are making a lot of money. You will not find an ACH transfer in QuickBooks eCommerce.

Here’s the analysis of rates and fees:

  • Basic Plan
  • Monthly Fee: $0.00
  • Swiped Qualified: 2.4% + $0.30/transaction
  • Keyed Qualified: 3.5% + $0.30/transaction
  • Monthly Plan
  • Monthly Fee: $20.00
  • Swiped Credit/Debit: 1.6% + $0.30/transaction
  • Keyed Qualified: 3.3% + $0.30/transaction

QuickBooks GoPayment

It is a mobile payment method integrated with QuickBooks.

It easily syncs with QuickBooks Online and allows you to pay by mobile and tab.

It allows entering immediate sale without choosing the product utilizing the items library.

If you are using QuickBooks Online, you can also collect tips and taxes, so this is a good option.

Here’s the analysis of rates and fees:

  • Monthly Fee: $0.00
  • Swiped/Dipped/Tapped Transactions: 2.4%+ $0.30 /transaction
  • Keyed Transactions: 3.4%+ $0.30/ transaction

Steps to Sign in to the Intuit QuickBooks Merchant Services Center from QuickBooks Online

  • Open QuickBooks Online and open the Settings ⚙ tab and click on Account and Settings.
  • Choose the Payments tab and click on Manage details. It will open a new tab and the Merchant Service Center.

Important: You can also sign in directly from the browser with the official merchant center web page.

How To Access statements in Intuit Merchant Service Center

Here, we will discuss how to access your payment account statements and how to change statement/deposit notification settings in the online service center.

You can view or download your details for up to 24 months on accessing the online service center and if you want you can also change your notification settings to allow you to get an email notification whenever the latest details are ready. Always remember that monthly statements usually become available in the initial 5 business days of every month.

If you want a paper statement, then download the copy(steps we discussed below), and print locally. Mailed paper statements are no longer available because it not environment friendly. It is always suggested to use Internet Explorer to avoid problems in observing this information.

Steps to view and download Statements

  • First, log in to the online service center.
  • Choose Activity & Reports, and from the drop-down menu select All Statements.
  • You can also access this feature from the Welcome screen. Just by clicking on All Statements as shown in the picture below.
Intuit QuickBooks Merchant Services
  • A list of all available statements then appears with options to either View or Download. Select the appropriate link for the action desired.
  • A list of all possible details then arrives with choices for view or download. Choose the relevant link for the desired action. 
  • All statements are available in pdf format, so you need any pdf reader installed on your computer.
Intuit QuickBooks Merchant Services

Steps to Process payments in the Merchant Service Center

Here we will discuss how to process credit cards and eChecks in the Merchant Service Center., You can process payments online with the Merchant Service Center with your QuickBooks Payments account. 

Note: The transactions you process at the Merchant Service Center are not imported into QuickBooks, Web Store, or Point of Sale. You must record the transaction manually.

 Steps to Process a credit card

  • First, log to the Merchant Service Center.
  • Look for the Processing Tools and choose to Charge a Card.
  • Enter all the entries. And also add Comments this is only visible to you and the cardholder.
  • After processing the payment, you got a confirmation page. Now you can choose Print, E-mail, Void, or Done.

 If you are using the Merchant Service Center because your QuickBooks software has been suspended then you can update or upgrade your software at any point time.

Note: The US zip code is needed for QuickBooks payment while processing the card. If you wish to process international cards, please contact the cardholder at your bank. 

Steps to Process an e-check

  • First, log into the Merchant Service Center.
  • Look for the Processing Tools and choose to Accept an eCheck.
  • Enter all the entries.
  • Choose I have a signed authorization or My customer is on the phone.
  • Click on Submit.

How to cancel your Intuit Merchant Credit Card Services account

If you are Mobile payment users, then you are able able to cancel online at merchant service centers. To cancel first you need to select Account and later click on the Account Profile and scroll to the foot of the page in the Account Cancellation region.

If you are not able to see the above steps then go to the merchant service centre official website and submit a cancellation request with following details of yours which are required. After submitting your request you will get a confirmation email within 10 days.

I hope you love to read this article and got a clear picture of the Intuit QuickBooks Merchant Services center. But if you still seeking technical help for your issue and query then feel free to reach us on +1-855-441-4417 and get quick support from our Intuit certified professionals.

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